Top 10 inventory management softwares for Shopify brands

Running a successful Shopify store isn’t just about great products or catchy ads—it’s about having the proper inventory in stock, in the right place, at the right time.

Yet, 43% of small businesses either don’t track inventory or do it manually, leading to overselling, stockouts, and unhappy customers.

As operations grow more complex, especially with bundles, multichannel sales, and supplier coordination, Shopify’s native tools often fall short.

That’s why many brands invest early in robust inventory workflows like these strategies commonly used by scaling Shopify sellers.

That’s where inventory management software steps in.

These tools automate stock tracking, streamline purchasing, sync listings across channels, and prevent costly errors.

This guide reviewed the top 10 inventory management software options for Shopify brands based on functionality, scalability, and user-friendliness.

Why Inventory Management Is Crucial for Shopify Brands

Inventory is your money, just sitting on shelves. If not managed well, it leads to:

• Stockouts, resulting in lost sales and customer churn.
• Overstocking, which ties up working capital and increases storage costs.
• Overselling, especially across platforms like Shopify, Amazon, and Etsy, damaging your seller rating.
• Manual errors, which slow down fulfillment and reduce order accuracy.

According to Shopify’s own data, 34% of businesses have shipped orders late due to inventory issues, and 70% of consumers say stock availability directly influences their buying decisions.

For modern Shopify brands, inventory management software isn’t a luxury—it’s a growth enabler

The Top 10 Inventory Management Tools for Shopify

1. Sumtracker – Best for Small to Medium-Sized Merchants

Sumtracker is built specifically to help growing e-commerce brands streamline inventory management without the complexity or cost of enterprise systems. Here’s why it’s a perfect fit for small to medium-sized merchants:

1. Simple, Powerful Inventory Sync: Sync inventory in real-time across Shopify, Amazon, and other channels—ensuring you never oversell or miss a sale.‍
2. Bundle & Kit Management Made Easy: Automatically track inventory for products sold in bundles or kits without any manual calculation.‍
3. Lightweight, Not Overwhelming: Unlike bloated ERPs, Sumtracker is easy to set up, intuitive to use, and tailored for small teams. It has every feature needed by small to medium-sized merchants for Inventory management‍
4. Smarter Restocking Decisions: Get low stock alerts, reorder suggestions, and purchasing tools that help you restock at the right time.‍
5. Affordable & Scalable: Transparent pricing that scales with your business—get all the features you need, without paying for what you don’t.‍
6. Responsive Support & Custom Solutions: Our team works closely with thousands of brands globally, often building tailored solutions to meet their workflows.

2. Inventory Planner – Great for Forecasting & Reordering

Inventory Planner helps you answer three critical questions: What to order, how much, and when?

Its core strength lies in demand forecasting, which is ideal for Shopify merchants dealing with seasonal products or volatile demand.

Key Features:

• Sales-driven demand forecasting
• Replenishment recommendations based on lead time and sales trends
• Bundling support and vendor performance tracking
• Integrates with Shopify, Amazon, QuickBooks, and more

Best for: Shopify sellers who want to optimize their purchasing and reduce cash tied up in excess inventory.

Limitations:

• Not Shopify-native, can feel disconnected or clunky for Shopify-first brands
• Requires training and setup time
• No built-in multichannel inventory sync or real-time tracking

3. Zoho Inventory – Great for Streamlined Order Management

Zoho Inventory offers essential inventory features at a budget-friendly price, making it a good fit for smaller Shopify merchants.

It handles order management, shipping, and barcode scanning—perfect for those who don’t need complex forecasting or ERP-level tools yet.

Key Features:

• Shopify integration with real-time order sync
• Barcode scanning for streamlined fulfillment
• Shipping label generation and courier tracking
• Integration with Zoho Books, CRM, and other Zoho apps

Best for: Shopify stores managing under 500 SKUs with basic needs and smaller teams.

Limitations:

• No bundling or kit support
• No forecasting or analytics
• Zoho ecosystem can be clunky to navigate

4. SKULabs – All-in-One Inventory + Shipping

SKULabs is a powerful platform combining inventory management, barcode scanning, and shipping operations in one.

It’s well-suited for brands juggling Shopify with Amazon, Walmart, and other marketplaces.

Key Features:

• Centralized order management across sales channels
• Barcode-based picking, packing, and shipping
• Real-time inventory sync and low stock alerts
• Shipping rate comparisons built in

Best for: Shopify sellers who want tight control over both inventory and shipping operations.

Limitations:

• Geared more toward warehouse-heavy brands
• UI can be overwhelming for smaller teams
• Requires setup to connect to 3PLs or advanced routing

5. TradeGecko (QuickBooks Commerce) – Designed for B2B

TradeGecko (now part of QuickBooks Commerce) is a smart choice for B2B merchants running on Shopify.

It adds layers like customer-specific pricing, bulk ordering, and wholesale portals—features often missing in DTC-focused tools.

Key Features:

• B2B order portals and tiered pricing
• Integrated invoicing, payments, and QuickBooks sync
• Multi-currency and multi-warehouse support
• CRM features for managing customer relationships

Best for: Shopify merchants selling wholesale or operating a hybrid B2B/DTC model.

Limitations:

• Only works for US based customers, discontinued for new users
• Lacks Shopify-first UX
• Doesn’t support bundles well

6. Cin7 – Robust for Complex Workflows

Cin7 is more than just inventory software—it’s a lightweight ERP built for retail, wholesale, and manufacturing.

It combines inventory with POS, warehouse, and supply chain features, making it ideal for multi-location operations.

Key Features:

• End-to-end inventory tracking across sales and fulfillment channels
• POS and warehouse management built in
• BOMs (Bill of Materials) for manufacturing
• Workflow automations and integrations with 700+ apps

Best for: Shopify brands with multiple warehouses, retail locations, or in-house manufacturing.

Limitations:

• Has Enterprise-level pricing
• Complex setup not suited for smaller brands
• Can feel overwhelming for Shopify-native users

7. Katana – Tailored for DTC Manufacturing Brands

Katana is built for makers and manufacturers selling directly to consumers.

It connects your Shopify store with raw material tracking and shop floor operations, making production and fulfillment flow together.

Key Features:

• Raw material and finished goods tracking
• Production planning and scheduling
• Real-time inventory updates across sales and manufacturing
• Visual dashboard and intuitive UI

Best for: DTC brands making their own products and looking to streamline manufacturing with Shopify.

Limitations:

• Designed solely for manufacturers
• Limited tools for multichannel eCommerce

8. Skubana (by Extensiv) – Built for Complex Warehouse Management

Skubana is designed for high-volume sellers and multichannel brands that need to automate backend operations.

It connects inventory, purchasing, and fulfillment in one platform with detailed analytics.

Key Features:

• Automated order routing and inventory sync
• Unified dashboard across all channels
• Profitability tracking by SKU or channel
• Native integrations with 3PLs, marketplaces, and accounting tools

Best for: Fast-scaling Shopify brands managing large SKU catalogs and high order volumes.

Limitations:

• Starts at $1,000/month, making it inaccessible for most small to mid-sized businesses
• Heavy onboarding required—steep learning curve and setup time
• Overkill for brands not operating high-volume warehouse networks

9. Unleashed – Great for Wholesale & Manufacturing

If you want to maintain the ERP-lite angle, Unleashed is an excellent choice. It offers strong manufacturing, B2B, and multi-warehouse support.

Key Features:

• Real-time inventory + batch tracking
• Bill of Materials and assembly support
• Supplier and procurement management
• BI dashboards and sales reporting

Best for: Shopify brands needing manufacturing, wholesale, and inventory control in one.

Limitations:

• Not Shopify-native, integration feels bolted on rather than seamless
• Complex interface with a steeper learning curve for eCommerce teams
• No multichannel inventory or bundling functionality built-in

10. Finale Inventory – Strong for High-SKU Sellers

Finale Inventory is a cloud-based tool designed to handle large product catalogs with speed and accuracy.

It shines with its barcode support, multi-warehouse controls, and custom reorder points.

Key Features:

• Barcode inventory and mobile stocktaking
• Reorder automation and low stock alerts
• Multi-warehouse, multi-location tracking
• High SKU count performance without lag

Limitations:

• Dated UI can slow team adoption
• Requires external setup for Shopify bundles and kit support
• Limited Shopify-native features; more geared for generic B2B workflows

Conclusion

Inventory management for Shopify isn’t just a backend task—it’s the foundation of a smooth, scalable business.

From preventing stockouts and overselling to streamlining operations across sales channels, the right software helps you stay in control as your brand grows.

Each tool we’ve covered offers something unique.

Some are built for simplicity, others for forecasting, bundling, or manufacturing.

The best choice depends on your workflow, team size, and the complexity of your operations.

If you’re at that point where spreadsheets or native Shopify tools are no longer cutting it, now’s the time to upgrade.

Even a small improvement in inventory accuracy can lead to fewer customer complaints, faster fulfillment, and better margins.

In the long run, good inventory software saves time and allows you to focus on growing your brand.

FAQs

1. What is the best inventory management software for Shopify?

There’s no one-size-fits-all answer—it depends on your needs. Sumtracker is great for small to medium size business, while Inventory Planner shines in forecasting. For manufacturers, Katana is ideal, and Zoho works well for smaller teams.

2. Do I need third-party inventory software if I already use Shopify?

Shopify has basic inventory tools, but they often fall short as your business grows. Third-party software offers advanced features like forecasting, bundling, warehouse control, and multichannel sync, essential for scaling operations.

3. Can I sync inventory between Shopify and Amazon?

Yes. Tools like Sumtracker allows real-time inventory sync across Shopify, Amazon, Etsy, and other platforms—preventing overselling and stock mismatches.

4. How much does inventory management software for Shopify typically cost?

Pricing ranges from $79/month for basic tools like Zoho Inventory to $1,000+/month for enterprise-level platforms like Skubana or Cin7. Most offer tiered pricing based on order volume or features.

5. Which software supports inventory bundling or kitting?

Sumtracker and Finale Inventory offer bundle/kitting support—automatically adjusting stock levels when components are sold individually or as part of a kit.

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